NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179943_1098341

Scaffold Ga0179943_1098341


Overview

Basic Information
Taxon OID3300019206 Open in IMG/M
Scaffold IDGa0179943_1098341 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_STIC08_MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)41.84Long. (o)-87.68Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061870Metagenome / Metatranscriptome131N
F074914Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0179943_10983411F074914AGGGGGMKISTLVKKSCAALHRVELLDPQECDREVFKMEIERARAIAYLVKTVSEIIAKNEMENRIAALEAAILQEKAS
Ga0179943_10983412F061870AGGAGGMKRRIEKLESLASWKSLPDASEYVQVWAIDPDQDEAEKWFETRDGARVTDPKTIERLTAYYAEALRRGELNITARFEDDPDT

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