Scaffold Ga0180032_1077205

Overview

Basic Information

• Taxon OID: 3300019201
• Scaffold ID: Ga0180032_1077205
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1258
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.183
  • Long. (^o): -123.19
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F037116	Metagenome / Metatranscriptome	168	N
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180032_10772052	F068565	N/A	MLTERTIFSLCEVLSNTTLQVRLADQIVDGEVVKASTFRRYCLAPGSDLAGQPEQVVAIAGAVWTPAAVAAYAASQTPSPTIQ
Ga0180032_10772053	F002843	N/A	MIVPVDIVSVQCNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVEAYKAANPVVEAAQPTE
Ga0180032_10772054	F037116	N/A	MEPTNSTNSPGLSLAAAAGATAVSFIPWLTDWVQLITALIGLACAIYGAYRLFKSK