Scaffold Ga0180035_1053573

Overview

Basic Information

• Taxon OID: 3300019191
• Scaffold ID: Ga0180035_1053573
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - R.880 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 956
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.217
  • Long. (^o): -123.78
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046638	Metagenome / Metatranscriptome	151	Y
F093912	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180035_10535731	F093912	N/A	KTRQPKAIITILRALLLKSKFFKTKPVAVHFNNLFFKYQSYILKKLKQKIFAKLVTSYLYKAHNGCRLKKKKRIKIRTRTRKL
Ga0180035_10535734	F046638	N/A	MINTLKSSIFKNLVVLIHGPIILLSSDNNNAKPTLKELESINPLINLLGFRLNNKIYSKKQIKNLKKMSYLENICIFHKSMKTLTKLPYYKLKSKKVLPISK