NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184595_123999

Scaffold Ga0184595_123999


Overview

Basic Information
Taxon OID3300019166 Open in IMG/M
Scaffold IDGa0184595_123999 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059694Metagenome / Metatranscriptome133Y
F086425Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0184595_1239991F086425GGAMGSKFLACYFAHLPAGLPTRSTFRLRRQLLVCPSIRLHPRLKPVAIFTGLLCRLCRLPQLPFRNFRSFGINASTSFATVRSTFRNRPIFVRSPQPFLLKIRLRIIV
Ga0184595_1239992F059694AGGAMESAQAEAFAGEGKAVTSKRSRLGEKLKAAARLKAMKRKLDKPVSGELTDEAHGAPERDAQYRACR

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