Scaffold Ga0193453_1157908

Overview

Basic Information

• Taxon OID: 3300019147
• Scaffold ID: Ga0193453_1157908
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002400 (ERX1782434-ERR1711973)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 587
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Pacific Ocean: TARA_132
• Coordinates
  • Lat. (^o): 31.5024
  • Long. (^o): -159.0393
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012091	Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193453_11579081	F012091	N/A	LQPALKMGLVITMVGSHSLVGGIIMVNKAALAECPSLVECLAMVDLNLGFGIVLDLNLDTGVNLFLNPGHSPMWSTTHQSKMAQVMRRKLRLLDMALASLKIGSVDLGALHKEILELQV