Scaffold Ga0188881_10044992

Overview

Basic Information

• Taxon OID: 3300019146
• Scaffold ID: Ga0188881_10044992
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS860_ls5
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 548
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015183	Metagenome / Metatranscriptome	256	Y
F033808	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188881_100449922	F033808	GAGG	MEIFLISGIAIGFLIGYPLGLFIDKLDKREKAKNVN
Ga0188881_100449924	F015183	AGCAGG	MAEDKSTLELISSITEFNDLHEYMGDDQLDKALAI