Scaffold Ga0193515_1028499

Overview

Basic Information

• Taxon OID: 3300019134
• Scaffold ID: Ga0193515_1028499
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003100 (ERX1782286-ERR1712165)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Gulf of Mexico: TARA_142
• Coordinates
  • Lat. (^o): 25.5921
  • Long. (^o): -88.4388
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022350	Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193515_10284991	F022350	GGA	MDQQQSDTNAPNAPHQVIYIIQAPKEKVDIKDAYNIKAATALGIIHIICGFIALGSDIAGMVTSHGAFATGIWTSILFFVSGGLAIGGARSGNKCLVVATMVMSIISAVSAGILLIMSAISLEIFGHYYRYRYGTSPVSYVLLIAMGVTMLAIAIASASLTCYPLCCRSTKQGVVHYKPNQVPASVLVNADQIAALNLPPLQDLQAHPSTSVQLLSDSAEPPTYQDVAGVGSNYQKF