Scaffold Ga0188839_1012233

Overview

Basic Information

• Taxon OID: 3300019122
• Scaffold ID: Ga0188839_1012233
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 975
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009839	Metagenome / Metatranscriptome	312	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188839_10122332	F009839	N/A	TICCDGGVDYSDLCEKYNVNYVHSYMRIGRRNSGHPSGVYGFTKDESLHWIHMFREAARHVRENGGTHMIMMEDDVLTQGEVKINPIWECAGFEVPGNTIAPALLDFIRNKYGADPNVDWYGAGGGSIYNIETFLDNYHRIYDFIDFDFENILSNMDYRFGWLDLYMQIAYFIIGKHYSINTNLTEVWKTPNFRESDFTLVHAYKELY