Scaffold Ga0188835_1005562

Overview

Basic Information

• Taxon OID: 3300019096
• Scaffold ID: Ga0188835_1005562
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1205
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 62.09708
  • Long. (^o): 18.5427
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029435	Metagenome / Metatranscriptome	188	Y
F035276	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188835_10055621	F029435	AGAAGG	MWDGWEAMGGTEMKKDLQELLTPEFLSTLHTAVECCNWDVDMVETMEFCNWCYSKAGVPGPYYDMSIEMEDEE
Ga0188835_10055624	F035276	GAG	MTKSYISCYNMPNKELEHFEVSYPIFVYIRQLECEIKYKYGGVQKLYDFRFGVEE