Scaffold Ga0187843_10161107

Overview

Basic Information

• Taxon OID: 3300019093
• Scaffold ID: Ga0187843_10161107
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 969
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F024537	Metagenome / Metatranscriptome	205	Y
F048947	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187843_101611072	F014503	N/A	MAMSTSVHHWRFNDGVTPINPGNQFGETILLRSWSCWVYPEDNHEFEIWMTRMCPTADFTPRFNSGDPMWTVTITDDKEATVFQLRWM
Ga0187843_101611073	F024537	GAGG	VKNLEQEILDELGTKMQSEIDREVMWGMLKSLGWRRVMLDRFTDNNHAVDITHWLAEHCNHAFERRGADFIFESEVDAVNFALRWK
Ga0187843_101611074	F048947	GAGG	MNSSQRRRGRREFRKLEHSVLIDGKTHQAAGAWCLTQFGKRWEAIGNTDGAWTMFWAGRNDFDKYVFHFVEERDKLMFILK