Scaffold Ga0187843_10025742

Overview

Basic Information

• Taxon OID: 3300019093
• Scaffold ID: Ga0187843_10025742
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3000
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002267	Metagenome / Metatranscriptome	576	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187843_100257425	F002267	GGAG	MGIEIGPGIEVGAGVSVGGGFAPSVTLVYDLDAANYTALPVNGSTVAGTGGFPITVTNSTSRLSWSSANGGIFSFTGAGGTTSDTMIGGPNWVTGQSYSVFMAYQRTAGVDGRLLNTNSEASKDWLMGLYNGNPNAFYPNGSVNLPSTGANFVWNFGWATLNISTGVGQMWIATNTQPTTFTYTATNAGFGGFNQLRMFSRASGSEPQTANIGLVQAYSGVFTTADIQGLYAQYK