Scaffold Ga0192992_10098686

Overview

Basic Information

• Taxon OID: 3300019054
• Scaffold ID: Ga0192992_10098686
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001590 (ERX1782183-ERR1711964)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 829
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_097
• Coordinates
  • Lat. (^o): -25.8076
  • Long. (^o): -111.6906
  • Depth (m): 488

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009424	Metagenome / Metatranscriptome	318	Y
F013647	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192992_100986862	F009424	AGGAGG	MAKVTKAQHTASGKIPANGLSSLENVSGETLASLALASHGPNQLPMGVVHKSISTDRGKFTFD
Ga0192992_100986863	F013647	GGAGG	MAGKINEVSAYVFGRVKPTSPKEAYGHSTAAGRGYYTMDDMSDERTDEFVRAQKASNNMANVEGEMVGSWNLDF