Scaffold Ga0192998_10028407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192998_10028407

Scaffold Ga0192998_10028407

Overview

Basic Information
Taxon OID	3300019043 Open in IMG/M
Scaffold ID	Ga0192998_10028407 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001784 (ERX1782103-ERR1712098)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1154
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_109
Coordinates	Lat. (^o)	2.0649	Long. (^o)	-84.5546	Alt. (m)		Depth (m)	380
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192998_100284071	F014356	GGAG	VDYVEEPAEVCVPTLETKCDQEDGGQTLELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPMPTEAKLVEPHWAEVCHQETICLNPRHTKPSYGAPPAYCHEEIHETCALEPTLEPVIRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCSVEKGEPACQETLLQLPQQACLQRIERVNTVYTTPERASYSG
Ga0192998_100284072	F035620	GAGG	VGYGRMIGRSGWSVVSSRLVVDKGSLSMCNMLVVDCGYGSSMVDLLVVVMGSDRGRDNSSLVASVAMADTGERAAHPVGCVEVTLRAGQGSQAGADKQDRLLTEHGCPSSNLNRLSNPH

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