Scaffold Ga0193535_10066548

Overview

Basic Information

• Taxon OID: 3300019024
• Scaffold ID: Ga0193535_10066548
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002797 (ERX1789427-ERR1719237)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_152
• Coordinates
  • Lat. (^o): 43.7056
  • Long. (^o): -16.8794
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193535_100665481	F014356	GAG	VPTLETKCDQEEGGQALELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPHWTEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCTLEPVLEPVLRPVTVSLPQPVEVCINKQIVLPYVECEKVKDRHCMVVPRAGKGYKYQIDKCIVESGEPACQETLLQLPRQACLQKIERVNTVYTSPEKVSYSG
Ga0193535_100665482	F035620	GAGG	MGNWSMIGRPSWSVVGSCLVMDKCRLSMGNMLVVDCSYRSCMVDLLVVGTGRRSNDGSLVGSMAMADTGERAPHSVGSVEVALRTCQGRQAGADKQDRLMTEHGCPSSNLNRLSN