Scaffold Ga0193525_10114540

Overview

Basic Information

• Taxon OID: 3300019015
• Scaffold ID: Ga0193525_10114540
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002109 (ERX1789583-ERR1719280)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1333
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_147
• Coordinates
  • Lat. (^o): 33.0096
  • Long. (^o): -66.547
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054881	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193525_101145401	F054881	GGGGG	MATRQPLLPAPAKGAGGKHTKLSIFYGADEYLEQLSKKYEQWDELAQLLQAAPDAGHFDTQDPAKKAAQAASAAGKGGGSLAHDVDENKRSKKTQRAIPTPNIPDPMPPELAFMFTKISPEQKMYMWNIYTLIFTLELLNIVMYWAMLRFSPLSWGVCTGIYIFLMVVLCVQNVYILHDVIHGATFPPYEWQNYITHPLADFINLPWMDIIMEHNRHHNSTFDLLNHGEFGWDPASWLYVLQEWTFEWYGWLTVPLVPFWHFIGASDTGMLFAFLWWSRFPDAGPGGKCDKAFYTKWLPTRVKYVAWTSFLWGSVWLLGSVGMGKPLSEGYPFLFAVSCGTRGGFSAAWVFITNFNHSHWWNEFLATDPDRTWPRVHATMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEK