Scaffold Ga0192880_10093841

Overview

Basic Information

• Taxon OID: 3300019009
• Scaffold ID: Ga0192880_10093841
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782233-ERR1711966)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_067
• Coordinates
  • Lat. (^o): -32.2401
  • Long. (^o): 17.7103
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017499	Metagenome / Metatranscriptome	240	Y
F087903	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192880_100938412	F017499	AGTAGG	MHGITKDKVYVDLNWGFDHVLGYWYDIIETRNGEETVVDEWHSGMGGSRSKMLEFLIKYNLPEEHRSMVGLDMQF
Ga0192880_100938414	F087903	N/A	EMKTNIITEEEQIEEILTEANSYNLRQEVITTASMFMQDDTELDKVAAYQMAYMEWIK