Scaffold Ga0192880_10004322

Overview

Basic Information

• Taxon OID: 3300019009
• Scaffold ID: Ga0192880_10004322
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782233-ERR1711966)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_067
• Coordinates
  • Lat. (^o): -32.2401
  • Long. (^o): 17.7103
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077199	Metagenome / Metatranscriptome	117	Y
F104999	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192880_100043224	F104999	N/A	MENPENLSPEELAAKKEEMLKFYKESMPYLQAQFDYEELLSQIDEMRLKRTQIQMAYAQMMAPPEQEDSMPQPEKASKKRKLKTEA
Ga0192880_100043225	F077199	AGAAG	MAIVKRVQKKVIMSTKDVIKFQLITHCYLNKITVSNSDLECLTLLSSTGPIEIAHFCYDAADEQKIFKSQQTVRNCINKCIKNKIVVKDNKNKKLIYINPKLNIETLGSIFLDYNFLAK