Scaffold Ga0193275_10062040

Overview

Basic Information

• Taxon OID: 3300018988
• Scaffold ID: Ga0193275_10062040
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782315-ERR1711974)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 985
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_097
• Coordinates
  • Lat. (^o): -25.826
  • Long. (^o): -111.7294
  • Depth (m): 188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008474	Metatranscriptome	332	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193275_100620401	F008474	GAG	LDVGCLHAVLLLELDVLLPEGVDAVDHALHELDLGVAETVLVGDVVGVAGLSARLSPGAPGLHLELLAPRLEFVDTLLGPAGQVHVDGGPHAGAEVGGAGVD