Scaffold Ga0193275

Basic Information
Taxon OID	3300018988 Open in IMG/M
Scaffold ID	Ga0193275_10000353 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782315-ERR1711974)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0193275_10000353 Open in IMG/M

Source Dataset Name

Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782315-ERR1711974)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3116
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

3116

Total Scaffold Genes

1 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_097
Coordinates	Lat. (^o)	-25.826	Long. (^o)	-111.7294	Alt. (m)	Depth (m)	188
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_097

Coordinates

Lat. (^o)

-25.826

Long. (^o)

-111.7294

Alt. (m)

Depth (m)

188

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013270	Metatranscriptome	272	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0193275_100003531	F013270	N/A	TWGLDQPSLLRSQHKMARLLLVGLVALCVASTKAAVIPMEEIVDGLQTFLTAPEESGLRLKRSTGEWDKEFDLSSMGILFQLKYTNPSNPFEGGRAHVKVPGARFVRNAPFDDMEMDITFNGGSAIDGLFDMKVDYKFIQKFMFLADRPQEGSFVLYRKLEGGMWKTRVTVDNNNMMPKPFLDIAVESDRKTKLHMLFNFEEDNKWELKIDRIPGQKMTIEAVIDGQKWTGVGTLNQGDMKLNLKVDSEFTGKHYNLDFDLNPAGMWGLHVTGDVDGPVDAKWTMQKDWTMGEIVMKYKNQNYAFMQLKGNAEMRGMFPVMFDYVVKYNINDAMQHQGKAKMKFDGKTPAKKFEMSFAPKTGTPIDYMFNMDFSSGFKYDYDLKINALTVEKGEGEWKWVNNAQKFELITKDTFTVHKQSPFHWMNVMVTRGREWTKMEHSRNIFFDKVNKAHLINKMKLEEHNILDGRTWYHFKYDNTAPKTAFLFTFLPYNMDRAWTYEGGRQHTANGGFTMTHKITHGENVIQEGEMVFDVKANDGSKFEMEHLHKMTMTEESPFYWLNHWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLTLDGEKISEFVFDNTQAKKHIKFFWAPDAFTKDYLFTDEWEYTGTKGIKWNTDLKRGGVSIWNYVGDYSWVNNANKFEIKMMDKIVQTPMSPFYGWDHFLIGIYYKTGDRTRTITYDKKNRNFLLGKLFVEDKIMAEGEKFYHIKLDTRATPYTLVWFHQPVRSLFPTTRDVTGQDELTVSAWHTPGKELKIETNLPEFRTMKVTSAGPAKTFWFNGEEKATVNFDTSSKTASHTMHLPSGKDLTIDLAWPKMTADASDLEFGVTITPDRKVVTKFGWEWAGVKKVYLDVVGNNPWIGDYKLSRQGEFEEVSGSLYKMKWTGHGETTKGFLRRVSPVETNVVASVNTRNLKVDAIVWKSFAGQKYGFTMNNDKFTLLAGKH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193275_10000353

Overview

Ecosystem & Geography

Associated Families

Sequences