Scaffold Ga0193188_10012770

Overview

Basic Information

• Taxon OID: 3300018987
• Scaffold ID: Ga0193188_10012770
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000041 (ERX1789590-ERR1719255)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_038
• Coordinates
  • Lat. (^o): 19.0235
  • Long. (^o): 64.5256
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046169	Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193188_100127701	F046169	N/A	DKSMVDGQKFQEKKLDTTKTPYTLIWYQPISPNWMSSTRDLFGVDQLEVRAWHQIGKELKIETNVGDMKLTVRRTPDYFVEFIRNGETMLKSKTDVTPATFTTTIDTLFYLPSTALLHKMFCLYGKGCFNKRQGHLKVVVDRVNKNAFMNKFSVESTVMKDDRLALEMSVSTMTTPYTFHMNAPYFLPRFFNDINRKTIDATITHQVGSKLEVKSNCPEFETFSVMTTGNKRSIVLNGKELTVVDFKRGDRTISQTTELPSGEHLTTTVEWTADTLKKNQATVTVEITPNRKFKGIFGWDFQTYYMGNFHVDVEGENPWVGDYAIDRHVNWNLSRPEYMFNWVGKSEFKSGPFATFSPIDSKINFNYNSRQMMLNADMVETMGGKQWGVKIHRNRFSLLTGVAA