Scaffold Ga0192961_10013424

Overview

Basic Information

• Taxon OID: 3300018980
• Scaffold ID: Ga0192961_10013424
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782312-ERR1712127)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1878
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_083
• Coordinates
  • Lat. (^o): -54.3739
  • Long. (^o): -65.1342
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035480	Metagenome / Metatranscriptome	172	Y
F057667	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192961_100134241	F057667	N/A	MEIFVEHWQSILLALLIAARAIFSLVPTDTPAFKIFGWVDLIITALVGGDKRKKKRKKIIINK
Ga0192961_100134243	F035480	GAG	MSLQITGAEKLYRNIDKVARWSIEDSQKLQDVGHRVGAVYANYIKANVKDLGKDTRLRGKLIKDGQLRRSGGTWLPNKKRNTVLAGPRTNAVGGRKVKNSANGFYAHIVEKGDFGPRFGGKHRTQNTGVFEKGIKATRSRSEKLQLMLLRQNFVQFTRGML