NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193417_10015013

Scaffold Ga0193417_10015013


Overview

Basic Information
Taxon OID3300018970 Open in IMG/M
Scaffold IDGa0193417_10015013 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002025 (ERX1789437-ERR1719295)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_125
CoordinatesLat. (o)-8.892Long. (o)-142.6358Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000481Metagenome / Metatranscriptome1089Y
F004929Metagenome / Metatranscriptome418Y

Sequences

Protein IDFamilyRBSSequence
Ga0193417_100150131F000481N/AMAERAKDQKKDEFEKLDAIIKKHENLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTREIAPSCVENVDELIERQEKSLVQLETKRGVVADLIEKGKKILDHPDKPKFLEGHVQRIEVGWDDTKQKAQDRLKLLTETKD
Ga0193417_100150132F004929N/AIAPSCVENVDELIERQEKALVQLETKRNAVRDLIEKGNILLQNPEKPRFLDEHVERIVMGWDDTKLKAQERLKLLQDTKAAWEGYAEGQDVIEEQFARAEEEMKKIKKRFNLDSAKDDLAKRQQILEKTKADLQGIYDKIKADYDIMCLTLPEDRKALVKKELAALTEKMAILATFEEKVKKIEDFCQNLELFDSTNKSLDDWMVRATEEMDKIKNHSHQMVPEDRVAVCMELQEDIAAKVLVIEENIRKEAEVLPQGESIPKDALEHKEELQRIHKYVLDLQEKVKQECAAFSEDVKFWAEYRTGIKEFTPWLENAEKESKDGLGKPSSLPEAIALFEKISLFDKSCLAHLSVLESAETASKKMTTHQEADDQIAEMMSRYKTVKQVADTWMQKVNTLVQEWKLLDATVNELNDWVAKDKTTEGENQFSLEKMESTLSELKNIYKEKEKLVENL
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