Scaffold Ga0192894_10029400

Overview

Basic Information

• Taxon OID: 3300018968
• Scaffold ID: Ga0192894_10029400
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000713 (ERX1782205-ERR1712096)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1297
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_068
• Coordinates
  • Lat. (^o): -31.0198
  • Long. (^o): 4.6685
  • Depth (m): 700

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092205	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192894_100294004	F092205	AGGA	MVKEEIVLPKNKMYVIMSPIGEDQFNIICVDKMEKPINELYYMMRGLCEMSIKHQEDLIEVGKEVMLQEKLKTTKQELRSNVIPFR