Scaffold Ga0193567_10089025

Overview

Basic Information

• Taxon OID: 3300018953
• Scaffold ID: Ga0193567_10089025
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002753
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_151
• Coordinates
  • Lat. (^o): 36.1631
  • Long. (^o): -29.0143
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000108	Metatranscriptome	2213	Y
F003943	Metatranscriptome	460	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193567_100890251	F000108	N/A	VTCTNSVEFNCKRDKSTKNDGYGPKGVVCSQKPTQSCYNIPRKIQVEVCKTDVHRYCEKFSNIHPFPVEEQNCHFEPKKICELEMKTRPKKAKKYSYTKDCKEQPREICDQCEKKTIQPVCEQQERLVCTYEPVESCRDEDKQYCHKVEKVELE
Ga0193567_100890252	F003943	GGA	MIRFIYLACLSVVWAAPQPPVYPTPAPTQKYNPDIGQTNVGGYGVNKDPYCHMVEKVVFENQCEPYTETTCYTQNRETCEPRFFNNCTGVIETNIERVCFDVNELVCDLVEAVHYETLEETYQVQRCFTGKDRVCDTTYKIDMTTKDDYQCTNVETPNCYMEEKVINATT