Scaffold Ga0192852_10184581

Overview

Basic Information

• Taxon OID: 3300018952
• Scaffold ID: Ga0192852_10184581
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000539 (ERX1782281-ERR1712142)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_064
• Coordinates
  • Lat. (^o): -29.5018
  • Long. (^o): 37.9887
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024026	Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192852_101845812	F024026	N/A	VTVTVCMTPLVKDCSVSGPEVCRTEYTSECWTRNDPHVVADDVPNCRTEYEERCVEKQSGYVTEEDCSKWPKEVCTVGRELKTKFNPVTKCEKVPQELCGPVGCGFVPGPEECHDDVRTVVTDVPSEVCDLQPQRKCAHVTKLVPKLTPVEECVDVPKEVCQRKKGNPRTVFKPVTKTWCYTPTEESGLA