NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193599_1000868

Scaffold Ga0193599_1000868


Overview

Basic Information
Taxon OID3300018946 Open in IMG/M
Scaffold IDGa0193599_1000868 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12461
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0193599_10008681F081092N/AMNGYDDFIERLETALANEQGREDFLEYLQGLTKECRAEILAEADQREAETEVA
Ga0193599_10008683F079676GGAGMSSETSDARAGIKAGDRVRALEGAYKDKVGTALRVVTSRNEGRTSESVLVSFPAGGADYLDVSELEKDDRGEAVVD

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