Scaffold Ga0193616_1008925

Overview

Basic Information

• Taxon OID: 3300018918
• Scaffold ID: Ga0193616_1008925
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 0 min after wetting v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2961
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048032	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193616_10089252	F048032	GGAGG	MDNQKPDKKQGKTLPSTNLPIVTLTDKDMSSVNGGTQRVWSG
Ga0193616_10089253	F048032	GGAGG	MNTKKQDQKQAKTLPLVKLSIVTLTDKDMSSVNGGATQSWAG
Ga0193616_10089254	F048032	GAGG	MDTKKQSQKPAKTLPLTQLPIVTLTEKDMSSVNGGSGYTWAG
Ga0193616_10089255	F048032	GGAGG	MDNQKPNKKQPNTLPLAKLPIVTLTEKDMSSVNGGRIGLPGGD
Ga0193616_10089256	F048032	AGGAG	MKTKKQSQKQVTTQLQVYLPILTLTEKDMSSVNGGGQINTI