NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193611_1010134

Scaffold Ga0193611_1010134


Overview

Basic Information
Taxon OID3300018917 Open in IMG/M
Scaffold IDGa0193611_1010134 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 0 min after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3477
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048032Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0193611_10101342F048032GGAGGMGTKNQSQKQPKTLPLAQLAIVTLTEKDMSSVNGGRIGLPGGNRASL
Ga0193611_10101343F048032GAGGMDTKKQSQKPAKTLPVTQLPIVTLSEKDMSSVNGGFAWNGGY
Ga0193611_10101345F048032GAGGMDTKKQSQKPAKTLPVTQLPIVTLTEKDMSSVNGGGYNSWAG
Ga0193611_10101346F048032GGAGGMDNKKPDQKQAKTLPLTKLPIVTLTDKDMSSVNGGTQRVWSG

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