Scaffold Ga0193591_1000342

Overview

Basic Information

• Taxon OID: 3300018915
• Scaffold ID: Ga0193591_1000342
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15770
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042667	Metagenome / Metatranscriptome	157	Y
F062306	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193591_100034210	F062306	AGGCGG	MFTQKTLQDLILHYSLEHQGCSVVVLLQALNQVTERLDNIEALLEKRQKAETYQMKEVKRAMLSKIAGQLNHLEKTHFNTINDLTAEVKAVKQALESAKSKFIGFE
Ga0193591_10003422	F062306	AGGCGG	MFTHKTLQDLILHHSLEQQTFSAVALLQVLNQLAERLDNIEALLEKRQQTERQQMQEVKRAMLSKVTGQLNHLEKTHLATITDLTAEVKAIKQSLENAKSKFIGFE
Ga0193591_10003429	F042667	N/A	MFGKWSVILRVADDETVYSLVSSEHPEAVFTGSKKQCLKYIRDVSGGE