Scaffold Ga0193548_10006393

Overview

Basic Information

• Taxon OID: 3300018907
• Scaffold ID: Ga0193548_10006393
• Source Dataset Name: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX1399744-ERR1328122)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.139
  • Long. (^o): -28.9598
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082867	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193548_100063931	F082867	GGA	MPKNRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLLLTVNPTLTDLSNTLATIYRQYRVTELSFTFQCSDVAGAYALAMQYVPQVGATPSTLPTTLSEFEGPAVGYCETGRGREYTYRVPSNVLNAMGLNYYSTRVNTAPAQDPDIVTQGLMVFLTSTPATPIIAFMHVKYEFQTLEDPSFLAKLMHGEDKESQATDSVFVTSPSKTKAGELWN