Scaffold Ga0193311_10012588

Overview

Basic Information

• Taxon OID: 3300018885
• Scaffold ID: Ga0193311_10012588
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001654 (ERX1789521-ERR1719396)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1080
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_102
• Coordinates
  • Lat. (^o): -5.252
  • Long. (^o): -85.2052
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010519	Metagenome / Metatranscriptome	302	Y
F085100	Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193311_100125882	F010519	N/A	MSILSISIVDLLANLLGESKLNILASRGSKLGDALLRGDGGVLNLWDSDALLLCEVLAADSWERDWLVDTGLDWLRVGNLNSWLNRGDNRDIIASLLGNLLAVVVSVAVVSVSWGWLADGNHLGVTLLLKGNLNSLGSGLFGLLLVRVGADLVVNFLNALGTNSTGDWVALFYIDNDLDGKLNGVADSLKSWGANFSSLNNILN
Ga0193311_100125883	F085100	GAG	MLGLLITVVGLVVDRGSMVDGMVDSMVGNWGMVDSVVGNWGMVSNYGGSMNCMVNNWGSMDCMVNSRGSMMGNVSTESCERNGWPTSHQGDKSKTSKDLHDVVVWK