NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181564_10715334

Scaffold Ga0181564_10715334


Overview

Basic Information
Taxon OID3300018876 Open in IMG/M
Scaffold IDGa0181564_10715334 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022392Metagenome / Metatranscriptome214N
F078418Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0181564_107153341F022392N/ATTPYDNTYMTNNNTTKEATMKSYDITYIDPWSNREVRHLDVPQCQLKDIDGETWFTGYNKPIEVITATLVDESRHAAKLSYFNTYGTASE
Ga0181564_107153342F078418GGAGMNSEQLEINNRTVFRQTKNMLYALRCKLSEAQQAPDEYAQCYVNELKQAIISLEAVKKYF

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