Scaffold Ga0193162_1035262

Overview

Basic Information

• Taxon OID: 3300018872
• Scaffold ID: Ga0193162_1035262
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000196 (ERX1789513-ERR1719216)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 974
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_025
• Coordinates
  • Lat. (^o): 39.4046
  • Long. (^o): 19.3886
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074368	Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193162_10352621	F074368	N/A	FEREITPEDSFYFDREAAWGSTPSEMTHFKFSSDKLAFDVRATYENPNYPWIEAVHKFRVTYRWPREWDVARFSLPARQGSGEYMIHMLWRGYRDVIDIDVLPEPANDVYGYAGGVNEWRKTDHCIYPNYNQHANTQCHYFQADQEDNVVACQEYCQSRGNKCNALNVVPLHTPEVVKIAGETPEPAIPWNKRCRQDRVPDSADENTMVCYTFRAQSPTYDGFNPETEDIWIIRDNDPLDPVFYSSCYRRAVKRAFEGNVACPLCEETPATTEAKWDINNRCLSCDAANTPHDASTVKLWQTSEICEKCF