Scaffold Ga0192970_1070300

Overview

Basic Information

• Taxon OID: 3300018848
• Scaffold ID: Ga0192970_1070300
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001442 (ERX1789421-ERR1719148)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 646
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_084
• Coordinates
  • Lat. (^o): -60.3046
  • Long. (^o): -60.5715
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011729	Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192970_10703001	F011729	N/A	GNVVKSHLLPPSPEAMSRSGCMILALLTAQSASAVLLVKKGQSCLKEDLMHRAALQNKLAGVCVDMCKEVGAFPKCTCPDFVPPDATPGVMTWPELLEHMDNLSEWGHGELKAWRSQASALQKSAATISEEACVSEDLQVRAALQNKFAGVCVDMCKEVGAFPKCTCPDFVAPDSTPGVMTWPELLEHMDNLSEWGHGELKSWRATAR