Scaffold Ga0193226_1048109

Overview

Basic Information

• Taxon OID: 3300018835
• Scaffold ID: Ga0193226_1048109
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000284 (ERX1782152-ERR1712198)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 995
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_047
• Coordinates
  • Lat. (^o): -2.0409
  • Long. (^o): 72.1645
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023516	Metatranscriptome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193226_10481091	F023516	N/A	HGDTMLPLLLVFLVPLVAGHGGMMWPPSWQDGVGVPLEELDTYKATTIPYTKDPATGRAIISIRAWLTDQAYLGGHGDQFEGIGNITNPECKSCETKIPWAAPGTALSLGGGCGIHGGNPYGCPVGNDTRAPGSKCGQFKRQRGTWAFGSSALDIEFPEAITTEWPLGSEQEVAWVAKGGHWGGYTYRLCKMPEEGKKGITEECFAQNVLKFATPYTMMRRIDRPGTWQKVDQVDLTEGTYPPGSAWRHVAYTTKLHPILRKDLVTVPSDLPSGEYVLSFRWDTKAPQIWVSCGTVRLLG