Scaffold Ga0193526_1060270

Overview

Basic Information

• Taxon OID: 3300018833
• Scaffold ID: Ga0193526_1060270
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_148 - TARA_N000002119 (ERX1789510-ERR1719289)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 846
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Calanidae → Calanus → Calanus helgolandicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_148
• Coordinates
  • Lat. (^o): 31.7432
  • Long. (^o): -64.1967
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104146	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193526_10602701	F104146	GAG	MSTVESESIPAFDMMASVKNLKVVDKAFELPVVTSAYNEIATLTSPITPYVESTVTFITPLVEGGFNTIKGNVIHRIPEGAAESLQSKVNGAVAHLSVAVEKVDTLACGGMEQLLEKVPSLKEETPELIKNSKDNATLYLADTTSFLASFSVALVMLKVFDASLDIVESAIMKSGGSDQNFLPSYVKKIHIMANDLRLEGSKRAGTDKSKQIEDASVLGAIMEVTGLAYLMGALGLGPSRTVIDGSICN