Scaffold Ga0193238_1000451

Overview

Basic Information

• Taxon OID: 3300018829
• Scaffold ID: Ga0193238_1000451
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001477 (ERX1789429-ERR1719435)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_080
• Coordinates
  • Lat. (^o): -40.6083
  • Long. (^o): -51.9557
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F004929	Metagenome / Metatranscriptome	418	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193238_10004511	F004929	AGGA	MTFWQENYHFIKDVYDMRHQKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLERAEVKRWLAQILEILMAERAKPEREKEYDQLDGLIKKHEELIPWVSKIMIKVDLYWKCYAYGDELKPHIEFLDGIMLSSTREIAPSCVENVDELIERQEKALVQLETKRAIVRDLIEKGNTLLQNPEKPKFLDSHVQRIVDGWDDTKLKAQERLNLLNDTKAAWEGYAEGQEGIALEFEKAEEEMNKIKKRFNLDNAKEDLAKRQEIFNNAKADLERIYNKVKNDYEVMAITLPEDKKALLKKELDALTEKMAIIGQFEEKVKKIEDFCGNLELFDNTSKSLDDWMTRAAGELDNIKNHCHTMCPEDRVAVCMELQEDIAAKVILIEESIAKEQELLPQGDSVPKDALAHKEELDRIHKFVLGLQSKVKTETSNFSEDVKFWAEYRTGIREFNPWLSKAESESSEGLGKPSSLPEALELYDKISLFDKNCLLNLKVLQSAEAAAKRMTTHQEADDQINELMGRYAKVKKVSDDWLSKVETLVKEWKLLDATVNELNDWVAKDKTTEGENQFSLEKMESTLCELKNIFKEKEKLVENL
Ga0193238_10004512	F000039	GGAG	VKKWLAQILEILMAERAKDQRKTEGDLLDNLIKKHEELIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLVQLETKRAVVKDLIEKGKVLLQNPDKPRFLDSHVNRIQEGWDDTKEKAQARLTLLSNTKAAWEGYGEGSIKIVDEFDKCQDETDKVKKRFNLESAFEDLARRQQIFKDTRASVQGTFDQLKADYDTMCLTLPDDKKELLKKELKPVEEKLAMISVFEEKVKIVEDFCNSLKAFDASLKSIDSWMTGAANELVEIKESSGQMTPEDRVSRTMDLQEDISAKVEVIEKAVADEAAILPQGDDVPEDAQLFKDELKRIQTFLLELQEKTKRECDAFSEDVKYWAEYRTGIKEFTPWLESAEKSSSEGLNKPTNLDEAEALFNKVSGFDSNCISQLKVLTAADAAAKKMTTHKDADVEVAALKVRFDKVKGISDDWMAKVNTLVKEWKLLDNTVTELNDWVAKDKTTEGENQFSLEKMESTLGELKNIFKQKEKLVEDL