Basic Information | |
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Taxon OID | 3300018815 Open in IMG/M |
Scaffold ID | Ga0187845_1003588 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7765 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F008071 | Metagenome | 339 | Y |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F047565 | Metagenome / Metatranscriptome | 149 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187845_10035881 | F008071 | N/A | MTAIEYVEASGVPESRWPNFKEWFGWYEKNNLVGVVKDGNEVVGVAIARAVDASQDVAHYKHDYSAPDAFVDLTVTSIDGKPNARSLLAMKCLLSILWDELGPRRSLIFNRNG |
Ga0187845_100358810 | F010603 | AGGAG | MASEFQRSPIKAKNKAVRIDGANFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS |
Ga0187845_100358811 | F004760 | AGGA | MPVYQYEDTRNGKVVELEKVVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSQFTPDSIKRATLRRKKYGI |
Ga0187845_10035883 | F000635 | AGCAGG | MTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAELDLYPRFATSGTIPLRVIEKLKCITRSNYIVDFPPSNEALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANTDLSAMANYELSQVGGVKQITPQSLGELTIEEMFSA |
Ga0187845_10035886 | F047565 | AGG | MEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRFNG |
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