Scaffold Ga0192950_1000035

Overview

Basic Information

• Taxon OID: 3300018791
• Scaffold ID: Ga0192950_1000035
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001390 (ERX1782108-ERR1712085)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4931
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_082
• Coordinates
  • Lat. (^o): -47.2002
  • Long. (^o): -58.2034
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012678	Metagenome / Metatranscriptome	278	Y
F025849	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192950_10000351	F012678	N/A	MLNQHSLEEIGDIHNLLEDIKKEYNDGIKSILIKNSPSRFKNPHTVPKLKKIQINRG
Ga0192950_10000359	F025849	AGGAG	LFQQEILKLILKLIETQNVNYLKIMNLNLFRYLTQVIEDPVTLRTVHEHQCKCMEESSIYHKQKDQKKENKKDVYQQNEDIVSDWITLSSNKKSFTSLEHIGINEKLKLPYEGRQLFTRWAHSYPNSNEIKSKTFYIKYDNELSLINKIMLNNFQSKYFYHAIDDIMHSLESRPIERDNLLAIIYSPILYLQNNFSIDFFDIWVDEVYINQESKVNKFLAKDSSNFEPFNYITIKLLYTTKLPVKKPEPLW