Basic Information | |
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Taxon OID | 3300018790 Open in IMG/M |
Scaffold ID | Ga0187842_1015826 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2553 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium HGW-Atribacteria-1 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014229 | Metagenome / Metatranscriptome | 264 | Y |
F032917 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187842_10158261 | F014229 | N/A | PFILSPLLMLVGCVTTPSGQVDATASVENAIPYIAPAVTLTCTVVLDQAVSGSDRIEKAKMINHVSTIVESLTRGTAPTPDQLQKALLDYLPAEKTHWVNYVTSIKDLYATQFAKVGGNTKLAIDVLNAIAKGCRDATASYVE |
Ga0187842_10158263 | F032917 | GGA | MSKKYATLLLSSILIAGCTTVTPDKVRDEIASYDASTPTQYDAQNSGFIGFMDDGRGLLTAFGVLRYNTLIKAYNIRFKSYKGVALVENAGITEFTDKLGNRLSVMDQQHLVYYAILNTWRKEGKEPDSIWDKTKDLLK |
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