Scaffold Ga0193380_1019449

Overview

Basic Information

• Taxon OID: 3300018781
• Scaffold ID: Ga0193380_1019449
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001992 (ERX1789655-ERR1719256)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1023
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_123
• Coordinates
  • Lat. (^o): -8.9068
  • Long. (^o): -140.283
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054505	Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193380_10194491	F054505	N/A	RHQAILAARPREDIDDFERNAVMNFEYARRHQTNPFVPRQYSFEAVAEIVTDLAQRYGKWQNAECRDMKEHLVELDPEGSGRVPLGLLYAQPPSASYHFSESAEYLRSIGALDETSSTPKVVIANYIMGPSNCIASGAYYSVCCLNNCDSIMDEIEHKVLAPTASPERLLGIVRNMSSAQHLPSNLVEKLKSIAERHGGDVPIHGRLFAQWLHFAFPHECPFPAVLKTASALATSQWHSTAYSASDEERTNHMNSVDGSILAENEVKVEELWSDHEVLSTYSDPQPSTGTATASIVRGAVQIAALCLALRSVLAAWKSAMGSGNEKAQKDSKKDDDLSIGL