Scaffold Ga0188848_1032453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188848_1032453

Scaffold Ga0188848_1032453

Overview

Basic Information
Taxon OID	3300018775 Open in IMG/M
Scaffold ID	Ga0188848_1032453 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	548
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	56.1664	Long. (^o)	16.378218	Alt. (m)		Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F020114	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188848_10324531	F009071	AGGAGG	MTPIFPDCYDEWGLYKFTYDGDHKMYEMIFEGTEEECRQYAYDNYTDKEYYQMCLMDWEAREWEV
Ga0188848_10324532	F020114	GGAG	MTKALKPQTFKHISRCIDKHGVHHLDALDDYGRHWYATMQQKEEPWLTYTQKWELRTH

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