Scaffold Ga0193181_1014674

Overview

Basic Information

• Taxon OID: 3300018766
• Scaffold ID: Ga0193181_1014674
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000317 (ERX1789428-ERR1719465)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1039
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_036
• Coordinates
  • Lat. (^o): 20.8222
  • Long. (^o): 63.5133
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000133	Metatranscriptome	1967	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193181_10146742	F000133	AGG	MATSAHTSKSCVTEDLQHRIAVQNKLAGQCEDMCKEIGAYPKCTCPDFVQPDATPGVMTWPELLEHMDNLSEWGHGELKAWAKRASSFVGIKVQGTQSEEACVAEDLKIRVAFQNKLAGQCEDMCKEVGAYPKCTCPDFVQPDATPGVMTWPELLEHMDNLSEWGHGELKAWAXXXXXX