Scaffold Ga0192827_1010220

Overview

Basic Information

• Taxon OID: 3300018763
• Scaffold ID: Ga0192827_1010220
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000064 (ERX1782288-ERR1711868)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1402
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_040
• Coordinates
  • Lat. (^o): 17.4825
  • Long. (^o): 67.9869
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070827	Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192827_10102202	F070827	AGGAG	MNHAFQQKTMQSAPVQSFSFQNINHQPVQRIQSVFPTLSNTYPMIQHPFMSMYTHGRKKRSSDADWISASELKELWTYKVSNLTCFMKGVGVIDDNYNIQKNFLKTKVWEMKDLRATEHLSDPVWRNKVSQQWVDCADIAEAIPEQALDNCPMTRMFGPLGRCMKFMMCKKEVTEAACGMAQAEKLQRRYHPNCLGGTGASVLGVRDRYEEAMACAMTMMHSKYTEDMTGKFVKKAIRGE