Scaffold Ga0193517_1067392

Overview

Basic Information

• Taxon OID: 3300018725
• Scaffold ID: Ga0193517_1067392
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003104 (ERX1782256-ERR1712230)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 590
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Gulf of Mexico: TARA_142
• Coordinates
  • Lat. (^o): 25.6168
  • Long. (^o): -88.4532
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046407	Metagenome / Metatranscriptome	151	N
F054057	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193517_10673921	F054057	N/A	GSDAIKLSKKDKPPPTAADTPTSGYYGADEDDVMNNIFNHYAVAVTNAAGSLTGAKVLYKEGCQKAAAEILLVTK
Ga0193517_10673922	F046407	GAGG	MESYMGEFFPRTWAKFDINNTGEIDITESHTFMRSLLGRLNQFVLAPGSLTDISVE