Scaffold Ga0192984_1036421

Overview

Basic Information

• Taxon OID: 3300018710
• Scaffold ID: Ga0192984_1036421
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001040 (ERX1809766-ERR1740136)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1008
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_085
• Coordinates
  • Lat. (^o): -62.0773
  • Long. (^o): -49.4534
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093091	Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192984_10364211	F093091	N/A	IGVVLAGRRVLLDHSVATMARGSNPLERTSVQLMLGVALIALCANSAVDRTDDGLPWEVTLGGFCVFAVIFSAVYAKRTEVALGICSILFVLMPTYHVHNSEVPFNNWLLGSVAPLAASKGAVLSAVWSASPNTSRFDEMLGLQAVGLSLMHFSMFNPGIALMINTSEVYHSGLKLDDPLTKERTHDYLLFTSPRKVKRRTESLALLARVPTKFDVWPKDIEDYEFSLQTAANIVAPPTFTGELVKLDKGRAIDAMMAKHNLRPFLLDVYNVEYNYD