Scaffold Ga0188851_1005724

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1005724
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F020144	Metagenome / Metatranscriptome	225	Y
F049575	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_10057242	F020144	GAGG	MNSNDFKPYTLIPGTQVLRSKIDVFEMTDPYDEDIKHRVELTCDNDGVFITSCEKAVREDISIAQKDLAIAVAKAILEAYS
Ga0188851_10057244	F000919	GGAGG	MRFRNIEFRWSTYNKKHELVKWYKVEERNYCYVVAFFDKTKEGWDMRTVGDRFFEDKDAWVVGKYGLEFLNKIFEIEKDEEELK
Ga0188851_10057245	F049575	AGGAGG	MTKLSAADLMVICDTLYKSLNVVGNSKWAKETRELTMQKVIVIMEQMNAEVVCSDVEPIVEPEWNETGDGV