Scaffold Ga0193571_1013285

Overview

Basic Information

• Taxon OID: 3300018671
• Scaffold ID: Ga0193571_1013285
• Source Dataset Name: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 646
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033825	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193571_10132851	F033825	N/A	MSSDEYTFENFEMKCGQSVTDSCVGKSVAGDKGFTDASFKKFVGGAVNVFTSGLNVFLSTSTQSFTINMIKGINALRCAVVNAADNAWNFIAAAWWAAYQFNQEALVEEGLDIAWPYICTCNKDMDFVSQMMGATGAGVAVFSSCSEAAQAATETS