Scaffold Ga0193013_1044823

Overview

Basic Information

• Taxon OID: 3300018668
• Scaffold ID: Ga0193013_1044823
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002464 (ERX1782441-ERR1712149)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 611
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Pacific Ocean: TARA_135
• Coordinates
  • Lat. (^o): 32.9986
  • Long. (^o): -121.7698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076817	Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193013_10448231	F076817	N/A	LGTVSSQWLYPGLYSGLTPPSTPLMTGTFVSKKIHPNQEQIVKTYNAVWGYEGEGADQVEGVEVSIAELEDKSGLQLTYGDLTLDMKYNQETTSTGWTSDGSELKTYTWRTGPNSIRIRNSNGDVNEMKDLVFHPNGFSASGTVSNKVTSAFQAEFYERVDENGAAKTLYLGYY