Scaffold Ga0192999_1001827

Overview

Basic Information

• Taxon OID: 3300018663
• Scaffold ID: Ga0192999_1001827
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001784 (ERX1782465-ERR1712058)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_109
• Coordinates
  • Lat. (^o): 2.0649
  • Long. (^o): -84.5546
  • Depth (m): 380

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001387	Metatranscriptome	708	N
F015818	Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192999_10018271	F001387	N/A	VTKQVCEKVHYKEVCRDIRTQECKNVPKEDCTEVQERQCETVEKEECQTVPRTECSETSNRQCRTFPKQECTDVPKLQCVQVPKVDCQDLNRQSCSEVPVQDCQQKPRRVCSLIPSTETKEVNDRQCQTVQKNVCQPISKQVCNDVNEPRQVCNDVPEEVCDDVLAPVTKYVDDEQCSNVGSRKCAPATRQECSDVVEQVPRQTFETECKTEYTQECTQPRSGGYGN
Ga0192999_10018272	F015818	N/A	APRAAPEPVCRQVPKEVCNQVPKTTYESVTKRDCRSVPDTVCADVQERKCQITQKAVQETVSRRQCRTQTRRECKTAQDTRKQCNTVQDEQCFNVPELKCVYVPRVVQETVHEEQCSTEYDQECTTRYENQCSPVMEKKCTTGTEAKCEVVNEKQCSTVQDEVCEDIPSKQCRVVSDRQWAVLKGPKTGVQECSSSPVQDCLWSRMQPSDQAGL